Human oral metagenome-assembly-genome

Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

Pan-genomics of metagenome-assembled genomes suffers from fragmentation and incompleteness

clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)

Rapid Profiling and Deconvolution Tool for Metagenomes

MetaSBT public databases

Lightweight bioinformatics pipeline for microbial genome recovery

Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

metacoverage estimation and tags generation from diamond aligner

The Metagenome-Assembled Genome Inventory for Children (MAGIC)

A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analysis and c) MAG assembly and annotation using a broad set of ready to use and included public databases and annotators

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids