Report templates and helper functions for applied epidemiology
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Nov 4, 2024 - R
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outbreaks
Here are 20 public repositories matching this topic...
During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.
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Dec 20, 2024 - Vue
Course on nowcasting and forecasting of infectious disease dynamcis
learning forecasting epidemics delay-estimation nowcasting outbreaks outbreak-analysis infectious-disease-dynamics
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Dec 9, 2024 - R
R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
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Sep 10, 2024 - R
Understanding, evaluating, and improving forecasts of infectious disease burden
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Dec 9, 2024 - TeX
R package for handling linelist data
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Dec 10, 2024 - R
Open an issue in this repository if you have general questions about RECON packages
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May 14, 2019
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
genome nextflow sequencing wgs ngs-analysis outbreak-detection bacterial-genomes outbreaks bacterial-wgs-training wgs-analysis
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Oct 31, 2024 - HTML
ISARIC VERTEX is a web-based application designed to present graphs and tables based on relevant research questions that need to be quickly answered during an outbreak. It serves as an analysis tool for data captured through our complementary tools: ISARIC ARC and ISARIC BRIDGE.
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Nov 15, 2024 - Python
This geospatial project maps Marburg virus transmission, a zoonotic disease with high case fatality rates in Africa. It highlights the need for medical treatment, isolation, and quarantine measures. Vaccines and contact tracing can limit the global spread of epidemics
virus public-health global-health africa zoonotic-disease isolation vaccine epidemic marburg quarantine outbreak outbreaks infectious-disease contact-tracing case-fatality-rate vaccine-development marburg-virus hemorrhagic-fever virus-transmission
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Apr 16, 2023 - Python
ISARIC ARC is a comprehensive machine-readable document that contains a library of questions to be used in Clinical Report Forms (CRFs) during disease outbreaks.
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Dec 3, 2024
Bayesian SEIR model fitting to multiple facility outbreaks
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Aug 17, 2022 - R
Office for Linelist Management
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Dec 21, 2024 - Python
BRIDGE is a web-based application designed to operationalize ARC and edit any ISARIC CRF and tailor it to outbreaks particular context.
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Dec 17, 2024 - Python
Documentation related to the project "Quantifying the Impact of Data Sharing on Outbreak Dynamics" (QIDSOD)
documentation data-science public-health data-integration epidemiology data-sharing datasharing outbreak outbreaks epidemiological-investigation covid-19 covid19 sars-cov-2 sarscov2 outbreak-severity outbreak-data-analysis next-pandemic outbreak-dynamics
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Jul 7, 2021
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