kishwarshafin / pepper Star 245 Code Issues Pull requests PEPPER-Margin-DeepVariant nanopore variants variant-calling oxford-nanopore genome-variation long-reads pacbio-ccs assembly-polishing Updated Jan 12, 2024 Python
PacificBiosciences / HiFiCNV Star 37 Code Issues Pull requests Copy number variant caller and depth visualization utility for PacBio HiFi reads cnv hifi pacbio-ccs Updated Oct 22, 2024 Shell
fmalmeida / ngs-preprocess Star 31 Code Issues Pull requests Discussions A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies workflow bioinformatics pipeline nextflow reproducible-research ngs reproducible-science pacbio illumina nanopack trimgalore ngs-preprocess bax2bam porechop pacbio-ccs Updated Jun 30, 2024 Nextflow
Redmar-van-den-Berg / HiFi-assembly Star 2 Code Issues Pull requests Assemble HiFi reads and identify genes of interest bioinformatics pacbio-ccs Updated Feb 1, 2022 Python
guigolab / pb_gen Star 1 Code Issues Pull requests Process PacBio Sequel and Sequel II subread BAMs into CCS FASTQ files sequence-analysis sequencing-rna pacbio-iso-seq-pipeline-wrapper pacbio-iso-seq pacbio-ccs Updated Sep 15, 2021 Python