🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
SWift and Optimized Recognition of protein Domains
Estimate PTM hotspots in protein sequence alignments
A suite of tools to build and search generalized profiles
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
dom2vec: Protein domain embeddings
FAS - Tool for Feature Architecture Similarity calculation
👐 TADOSS: TAndem DOmain Swap Stability predictor
An automated method to map yeast variants to proteins modifications and functional regions
Comparison of protein learning
Profile hidden Markov model (HMM) to identify the Kunitz domain in protein sequences, using MSA-guided training and optimization.
UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).
DrugDomain database
Refining Domain Boundaries and Performing Large Scale Parsing
CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.
Protein-RNA docking benchmark v3.0
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