Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
A Julia package to analyze protein sequences, structures, and evolutionary information
Co-occurrence of enzyme domains
Scripts to calculate sequence similarity networks (SSNs) and clustering of protein sequences.
PFAM's micro service to assist to Mistic2.
PARS is a python package for browsing and downloading files deposed in Pfam and Rfam databases (e.g. sequences, alignments, hmm). It has implemented classes dedicated to Pfam data like: PfamFamily or PfamClan. PARS is compatible with Biopython modules, but also is extended by HMMER wrapper which enables convenient usage of downloaded HMM files. …
Interactively explore the relationship between a variant of interest, protein structure, and previously reported variants.
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
A deepchain-app to predict protein family 🔬
Set of tools for protein sequence enrichment and protein domain finding
Find NLR hmms in protein sequences.
CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.
A Bio2BEL package for PFAM (https://pfam.xfam.org/)
Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.
Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice
Add a description, image, and links to the pfam topic page so that developers can more easily learn about it.
To associate your repository with the pfam topic, visit your repo's landing page and select "manage topics."