Jackson Labs Summer Student Program 2018, Bar Harbor, ME. Statistically analyzing the effect of genetic diversity on the aging heart. Final paper: https://docs.google.com/document/d/1rkDRjnS6XhkFGk6EpzB4V24XqJdfN_JaM4vh5cc3iBA/edit
Wheat BRIL database created using FLASK server side, angularjs is heavily used at front end
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
Pipeline for polymap and QTL Mapping
Repository for genomic webapplications served from GitHub pages
Analyses of my MSc Thesis: "Genetic architecture of parasitoid counteradaptation to symbiont-conferred resistance"
To enable quantitative trait loci mapping of neighbor effects, this package extends a single-marker analysis to interval mapping.
Code and data from the Bredeson, Lyons, et al. Dioscorea alata var. TDa95/00328 v2 genome and analysis manuscript.
Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R
Convert HapMap file into a useable R qtl2 genotype file
MetaPipe: A High-Performance Computing pipeline for QTL mapping of large metabolomic datasets
Scripts of Final Master Project
To map Drosophila melanogaster gene region(s) containing resistance to infection by parasitic wasp Leptopilina boulardi.
GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]
This repository contains data and code to reproduce analysis in the manuscript, "A mutation in Themis contributes to peanut-induced oral anaphylaxis in CC027 mice"
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