Long read aligner for cyclic and acyclic pangenome graphs
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Dec 20, 2023 - C
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read-alignment
Here are 5 public repositories matching this topic...
Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis" at https://people.inf.ethz.ch/omutlu/pub/GenASM-approximate-string-matching-framework-for-genome-analys…
approximate-string-matching read-mapping hw-sw-co-design read-alignment bitap-algorithm pre-alignment-filtering genome-sequence-analysis
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Dec 19, 2022 - C
Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
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Nov 11, 2024 - Nextflow
Custom scripts and workflows used in the genomics and population analysis of oat crown rust (Puccinia coronata f. sp. avenae) preprint (bioRxiv 2023.09.18.557855). All steps performed in Linux environment or R.
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Sep 21, 2023 - Python
Material used for a course on handling high-throughput genomic data handling, covering DNA sequence assembly, RNA-seq data analysis, metagenomics, and read alignment
rna-seq-analysis high-throughput-sequencing metagenomic-analysis marker-gene-analysis sequence-assembly read-alignment
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Jan 15, 2022 - HTML
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