a framework for training sequence-level deep learning networks

PANDORA 💻

A modular annotation tool for genomic variants

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

RADseq Data Exploration, Manipulation and Visualization using R

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Phigaro is a scalable command-line tool for predicting phages and prophages

stackr: an R package to run stacks software pipeline

Build DeepSea training dataset from raw data

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Shiny app for making and annotating Volcano plots

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Genome Contact Map Explorer - gcMapExplorer. Visit:

genomic alignment similarity search tool

Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data

The AnnSQL package enables SQL based queries on AnnData objects.