(current) A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
aws bioinformatics snakemake scalable ec2 nextflow ngs slurm budgeting bioinformatics-pipeline informatics scaling cwl wgs ephemeral genomic-data-analysis aws-parallelcluster giab aws-parallel-cluster sarek
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Updated
Oct 18, 2025 - Python