A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
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Updated
May 5, 2024 - R
A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
handful of tools that might be needed before or after HAMR
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data
Convert mpileup format to base count tsv table
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
RNA modifications detection from Nanopore dRNA-Seq data
Identification of differential RNA modifications from nanopore direct RNA sequencing
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