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shapeit2

Here are 5 public repositories matching this topic...

gwas-tips

esohkevin / gwas-tips

tips and tricks in genome-wide association studies - a tutorial

gwas thesis plink admixture vcftools genotype-data gwas-dataset gwas-pipeline snptest gwas-tools impute2 qctool shapeit2 chromopainter finestructure

Updated Jul 25, 2023

hernanmd / BioScripts

A collection of miscellaneous bioinformatics scripts

bash bioinformatics illumina cnv affymetrix shapeit2

Updated Feb 28, 2020
Smalltalk

rootstrap / ImputationGeneris

DNA Imputation tool for Generis.

bioinformatics r snps genetics sequencing plink dna imputation plumber shapeit2

Updated Aug 8, 2019
R

tanoramb / Ancestry

Pipeline to calculate local ancestries using RFMix 1.5 or RFMix 2.0 and Beagle5 or ShapeIT

gwas ancestry beagle shapeit2 ancestry-inference ancestry-estimation rfmix

Updated Jun 14, 2023
Shell

jamonterotena / shapeit_reformat

The bash script reformats SHAPEIT .haps file to show samples by rows instead of variants by rows

bioinformatics haplotypes pedigree shapeit2

Updated Mar 21, 2022
Shell

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