Spatial alignment of single cell transcriptomic data.
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Jun 12, 2024 - Jupyter Notebook
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snrna-seq
Here are 12 public repositories matching this topic...
A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
visualization workflow bioinformatics snakemake scrna-seq single-cell 10xgenomics biomedical-data-science cite-seq snrna-seq sccrispr-seq
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Dec 20, 2024 - R
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
visualization workflow bioinformatics snakemake scrna-seq single-cell biomedical-data-science differential-expression-analysis volcano-plot snrna-seq
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Dec 20, 2024 - R
A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
visualization workflow bioinformatics snakemake scrna-seq single-cell biomedical-data-science perturbation-analysis snrna-seq sccrispr-seq
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Dec 20, 2024 - R
snRNA_seq portion of the spatialDLPFC project
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Aug 16, 2024 - HTML
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
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Dec 10, 2024 - R
habenulaPilot project code repository
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Jul 11, 2024 - HTML
A tool for single cell genomics data processing and analysis
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Nov 1, 2024 - Shell
Workflows for sc/snRNAseq from count data.
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Dec 19, 2024 - R
An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.
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Jun 20, 2022 - Python
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