Jupyter notebooks for the analysis and visualization of data from the manuscript "Lineage tracing of Shh+ floor plate cells and dynamics of dorsal-ventral gene expression in the regenerating axolotl spinal cord". The notebooks include data preprocessing, data modeling, statistical analysis and plotting scripts used in the study.
OSCI: Ontology for Stem Cell Investigations
Originally developed for scientific outreach presentation at the SFBD-JSDB Conference 2022 held at Strasbourg.
Comprehensive Enumeration of Cancer Stem-like Cell Heterogeneity Using Deep Neural Network
The Integrated Mitotic Stem Cell is a data driven model and visualization tool that captures a holistic view of human cell division. This model transforms microscopy images of 15 individual organelles into an integrated representation of the undifferentiated human induced pluripotent stem cell (hIPSC) at each major stage of mitosis.
The aim was to re-analyze published of RNAseq differential expression datasets
A repository for our science project on bioethics
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
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