Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.
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Updated
Jun 9, 2018 - Java
Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.
🧬 A curated list of awesome resources for repeat DNA research
This program can detect repeated sequences in DNA.
Universal STR Allele Toolkit (USAT) for viewing and comparison
Discover VNTR-associated DELs that are hard to find using Illumina reads
A python library for decomposing and visualizing tandem repeat sequences
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
Typing of Clostridioides difficile isolates using NGS data (reads and contigs) based on tandem repeat loci (TR6, TR10), and toxin genes (cdtA, cdtB, tcdA, tcdB, tcdC).
Targeted characterisation of short structural variation.
R package to get the most out of the results from TRAL
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
Supporting code for the microsatellite genotyping paper introducing CHIIMP
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