SDK for GPU accelerated genome assembly and analysis
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Updated
May 3, 2024 - Cuda
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partial-order-alignment
Here are 7 public repositories matching this topic...
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
simd long-reads multiple-sequence-alignment partial-order-alignment consensus-sequences banded-dp consensus-sequence alignment-graph gfa-format
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Updated
Jan 28, 2025 - C
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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Jun 17, 2024 - C
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
tandem-repeats long-reads multiple-sequence-alignment nanopore-sequencing seed-and-chain partial-order-alignment
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Updated
Jun 17, 2024 - C
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
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Updated
Jul 20, 2023 - C
An extension to the wavefront algorithm that generalizes it to work on directed acyclic sequence graphs
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Updated
Feb 6, 2022 - C
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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Updated
Oct 21, 2020 - C
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