Tandem repeat expansion detection or genotyping from long-read alignments
-
Updated
Sep 26, 2024 - Python
Tandem repeat expansion detection or genotyping from long-read alignments
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Toolkit for VNTR genotyping and repeat-pan genome graph construction
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
A python library for decomposing and visualizing tandem repeat sequences
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
Universal STR Allele Toolkit (USAT) for viewing and comparison
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
Targeted characterisation of short structural variation.
Computational, High-throughput Individual Identification through Microsatellite Profiling
This program can detect repeated sequences in DNA.
Discover VNTR-associated DELs that are hard to find using Illumina reads
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.
Add a description, image, and links to the tandem-repeats topic page so that developers can more easily learn about it.
To associate your repository with the tandem-repeats topic, visit your repo's landing page and select "manage topics."