Update terminology to reflect ARG paper #592
Workflow file for this run
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| # Based on https://github.com/executablebooks/github-action-demo | |
| name: build | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| tags: | |
| - '*' | |
| # This job installs dependencies, build the book, and pushes it to `gh-pages` | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/cancel-workflow-action@0.12.0 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| # Install dependencies | |
| - name: Install Graphviz | |
| run: | | |
| sudo apt-get install graphviz {lib,}graphviz-dev | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: "pip" | |
| - name: Install python dependencies | |
| run: | | |
| pip install --upgrade pip wheel | |
| pip install -r requirements-CI.txt | |
| - name: Install R support | |
| run: | | |
| # We need to remove R to pull in a version that's compatible with CRAN, weirdly. | |
| sudo apt-get update | |
| sudo apt-get remove r-base-core | |
| sudo apt-get install r-cran-reticulate r-cran-pbdzmq r-cran-uuid r-cran-ape | |
| sudo R -e 'install.packages("IRkernel")' | |
| R -e 'IRkernel::installspec()' | |
| # Build the book | |
| - name: Build the book | |
| run: ./build.sh | |
| - name: Copy files for users to run tutorials | |
| run: | | |
| cp ./requirements.txt ./_build/html/. | |
| cp -r data ./_build/html/examples | |
| ls data > ./_build/html/examples/files.txt | |
| # Push the book's HTML to github-pages | |
| - name: GitHub Pages action | |
| if: github.ref == 'refs/heads/main' | |
| uses: peaceiris/actions-gh-pages@v3.9.3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./_build/html | |
| - name: Trigger docs site rebuild | |
| if: github.ref == 'refs/heads/main' | |
| run: | | |
| curl -X POST https://api.github.com/repos/tskit-dev/tskit-site/dispatches \ | |
| -H 'Accept: application/vnd.github.everest-preview+json' \ | |
| -u AdminBot-tskit:${{ secrets.ADMINBOT_TOKEN }} \ | |
| --data '{"event_type":"build-docs"}' |