fix paths in github action #7
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| name: Publish Python distribution of dev immuneML to PyPI and Conda | |
| on: | |
| push: | |
| branches: | |
| - nar | |
| jobs: | |
| build_python_package: | |
| name: build distribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - name: Install pypa/build | |
| run: >- | |
| python3 -m | |
| pip install | |
| build | |
| --user | |
| - name: Build a binary wheel and a source tarball | |
| run: python3 -m build | |
| - name: Store the distribution packages | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| publish_to_pypi: | |
| name: Publish Python distribution to PyPI | |
| needs: [ build_python_package ] | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: dev_nar_env | |
| url: https://pypi.org/p/immuneML_dev | |
| permissions: | |
| id-token: write | |
| steps: | |
| - name: Download all the dists | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - name: Publish distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| make_conda_package_from_pypi: | |
| name: Make conda package from PyPI | |
| runs-on: ubuntu-latest | |
| needs: [ publish_to_pypi ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build conda meta.yaml from PyPI package | |
| run: | | |
| conda install conda-build | |
| conda skeleton pypi immuneML-dev | |
| conda config --add channels conda-forge | |
| conda config --add channels bioconda | |
| python3 scripts/update_conda_meta_file.py | |
| - name: Build conda package from meta.yaml | |
| run: conda-build immuneML-dev | |
| deploy_to_conda: | |
| name: Conda deployment of package with Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| needs: [ make_conda_package_from_pypi ] | |
| strategy: | |
| matrix: | |
| python-version: [ "3.8", "3.9", "3.10", "3.11" ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Conda environment creation and activation | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: immuneML-dev/meta.yaml | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| show-channel-urls: true | |
| - name: Build and upload the conda packages | |
| uses: uibcdf/action-build-and-upload-conda-packages@v1.2.0 | |
| with: | |
| meta_yaml_dir: immuneML-dev/conda-build | |
| python-version: ${{ matrix.python-version }} | |
| platform_linux-64: true | |
| platform_osx-64: true | |
| platform_win-64: true | |
| user: milenapavlovic | |
| label: auto | |
| token: ${{ secrets.ANACONDA_TOKEN }} |