update conda in github action #8
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Publish Python distribution of dev immuneML to PyPI and Conda | |
| on: | |
| push: | |
| branches: | |
| - nar | |
| jobs: | |
| build_python_package: | |
| name: build distribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - name: Install pypa/build | |
| run: >- | |
| python3 -m | |
| pip install | |
| build | |
| --user | |
| - name: Build a binary wheel and a source tarball | |
| run: python3 -m build | |
| - name: Store the distribution packages | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| publish_to_pypi: | |
| name: Publish Python distribution to PyPI | |
| needs: [ build_python_package ] | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: dev_nar_env | |
| url: https://pypi.org/p/immuneML_dev | |
| permissions: | |
| id-token: write | |
| steps: | |
| - name: Download all the dists | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - name: Publish distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| make_conda_package_from_pypi: | |
| name: Make conda package from PyPI | |
| runs-on: ubuntu-latest | |
| needs: [ publish_to_pypi ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build conda meta.yaml from PyPI package | |
| run: | | |
| conda install conda-build | |
| conda skeleton pypi immuneML-dev | |
| conda config --add channels conda-forge | |
| conda config --add channels bioconda | |
| python3 scripts/update_conda_meta_file.py | |
| - name: Build conda package from meta.yaml | |
| run: conda-build immuneML-dev | |
| deploy_to_conda: | |
| name: Conda deployment of package with Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| needs: [ make_conda_package_from_pypi ] | |
| strategy: | |
| matrix: | |
| python-version: [ "3.8", "3.9", "3.10", "3.11" ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Conda environment creation and activation | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: immuneML-dev/meta.yaml | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| show-channel-urls: true | |
| - name: Build and upload the conda packages | |
| uses: uibcdf/action-build-and-upload-conda-packages@v1.2.0 | |
| with: | |
| meta_yaml_dir: immuneML-dev/conda-build | |
| python-version: ${{ matrix.python-version }} | |
| platform_linux-64: true | |
| platform_osx-64: true | |
| platform_win-64: true | |
| user: milenapavlovic | |
| label: auto | |
| token: ${{ secrets.ANACONDA_TOKEN }} |