test nar PR #765
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| name: Run tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths: ['**.py', '**.yaml'] | |
| pull_request: | |
| branches: [ master ] | |
| paths: ['**.py', '**.yaml'] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.11 | |
| # - uses: actions/cache@v2 | |
| # with: | |
| # path: ~/.cache/pip | |
| # key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| # restore-keys: | | |
| # ${{ runner.os }}-pip- | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest | |
| pip install -r requirements.txt -r requirements_TCRdist.txt -r requirements_DeepRC.txt -r requirements_generative_models.txt | |
| - name: Install CompAIRR | |
| run: | | |
| git clone https://github.com/uio-bmi/compairr.git | |
| make -C compairr | |
| # - name: Lint with flake8 | |
| # run: | | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| env: | |
| PYTHONFAULTHANDLER: 1 | |
| run: python -m pytest |