Fixed outdated links and redirects (#116)

for CRAN resubmission

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: OpenSpecy
 Type: Package
 Title: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
-Version: 0.9.4
-Date: 2022-07-04
+Version: 0.9.5
+Date: 2022-07-06
 Authors@R: c(person("Win", "Cowger", role = c("cre", "aut"),
       email = "wincowger@gmail.com",
       comment = c(ORCID = "0000-0001-9226-3104")),
@@ -34,9 +34,9 @@ Description: Raman and (FT)IR spectral analysis tool for plastic particles and
     reference library (Cowger et al. 2020, <doi:10.1177/0003702820929064>).
     Analyzed spectra can be shared with the Open Specy community. A Shiny app is
     available via run_app() or online at
-    <https://wincowger.shinyapps.io/OpenSpecy/>.
-URL: https://github.com/wincowgerDEV/OpenSpecy
-BugReports: https://github.com/wincowgerDEV/OpenSpecy/issues
+    <https://openanalysis.org/openspecy/>.
+URL: https://github.com/wincowgerDEV/OpenSpecy-package/
+BugReports: https://github.com/wincowgerDEV/OpenSpecy-package/issues/
 License: CC BY 4.0
 Encoding: UTF-8
 LazyLoad: true

NEWS.md

@@ -1,3 +1,10 @@
+# OpenSpecy 0.9.5
+
+## Bug Fixes
+
+- Fixed outdated links and redirects
+
+
 # OpenSpecy 0.9.4
 
 ## Minor Improvements

README.md

@@ -5,7 +5,7 @@ Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
 <!-- badges: start -->
 [![CRAN version](https://www.r-pkg.org/badges/version/OpenSpecy)](https://CRAN.R-project.org/package=OpenSpecy) 
 [![Project Status](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
-[![R-CMD-check](https://github.com/wincowgerDEV/OpenSpecy/workflows/R-CMD-check/badge.svg)](https://github.com/wincowgerDEV/OpenSpecy/actions)
+[![R-CMD-check](https://github.com/wincowgerDEV/OpenSpecy-package/workflows/R-CMD-check/badge.svg)](https://github.com/wincowgerDEV/OpenSpecy-package/actions)
 [![License: CC BY 4.0](https://img.shields.io/badge/license-CC%20BY%204.0-lightgrey.svg)](https://creativecommons.org/licenses/by/4.0/)
 [![DOI](https://img.shields.io/badge/DOI-10.1021/acs.analchem.1c00123-blue.svg)](https://doi.org/10.1021/acs.analchem.1c00123)
 [![Website](https://img.shields.io/badge/web-openspecy.org-white)](https://wincowger.shinyapps.io/OpenSpecy/)
@@ -24,7 +24,7 @@ with Zhao et al. (2007, doi:
 identifying spectra using an onboard reference library (Cowger et al. 2020, doi: [10.1177/0003702820929064](https://doi.org/10.1177/0003702820929064)).
 Analyzed spectra can be shared with the Open Specy community. A Shiny app is
 available via `run_app()` or online at
-[http://www.openspecy.org](https://wincowger.shinyapps.io/OpenSpecy/).
+[https://openanalysis.org/openspecy/](https://openanalysis.org/openspecy/).
 
 ## Installation
 
@@ -56,7 +56,7 @@ run_app()
 ```
 
 See
-[package vignette](https://htmlpreview.github.io/?https://github.com/wincowgerDEV/OpenSpecy/blob/main/vignettes/sop.html)
+[package vignette](https://htmlpreview.github.io/?https://github.com/wincowgerDEV/OpenSpecy-package/blob/main/vignettes/sop.html)
 for a detailed standard operating procedure.
 
 ## Workflow
@@ -105,5 +105,5 @@ Needs an Open Source Community: Open Specy to the Rescue!”
 [10.1021/acs.analchem.1c00123](https://doi.org/10.1021/acs.analchem.1c00123).
 
 Cowger W, Steinmetz Z (2021). “OpenSpecy: Analyze, Process,
-Identify, and Share Raman and (FT)IR Spectra.” *R package*, **0.9.4**.
-[https://github.com/wincowgerDEV/OpenSpecy](https://github.com/wincowgerDEV/OpenSpecy).
+Identify, and Share Raman and (FT)IR Spectra.” *R package*, **0.9.5**.
+[https://github.com/wincowgerDEV/OpenSpecy-package](https://github.com/wincowgerDEV/OpenSpecy-package).

cran-comments.md

@@ -10,9 +10,12 @@
 
 ## R CMD check results
 
-0 errors | 0 warnings | 0 note
+0 errors | 0 warnings | 1 note
 
 
 ## Comments
 
-See NEWS file
+DOI links do not pass remote checks although they resolve fine using a web
+browser
+
+For further details, see NEWS file

inst/shiny/ui.R

@@ -295,13 +295,13 @@ ui <- fluidPage(
                                ),
                                p(class = "lead",
                                  HTML("<span style='position: relative; top:.8ex;'><a
-                                    class='github-button' href='https://github.com/wincowgerDEV/OpenSpecy/subscription'
+                                    class='github-button' href='https://github.com/wincowgerDEV/OpenSpecy-package/subscription'
                                     data-color-scheme='no-preference: dark; light: dark; dark: dark;'
                                     data-size='large' aria-label='Watch wincowgerDEV/OpenSpecy'>Watch</a></span>
                                     us develop Open Specy on GitHub, file an
                                     <span style='position: relative; top:.8ex;'><a
                                     class='github-button'
-                                    href='https://github.com/wincowgerDEV/OpenSpecy/issues'
+                                    href='https://github.com/wincowgerDEV/OpenSpecy-package/issues'
                                     data-color-scheme='no-preference: dark; light: dark; dark: dark;'
                                     data-icon='octicon-issue-opened' data-size='large'
                                     aria-label='Issue wincowgerDEV/OpenSpecy on GitHub'>Issue</a></span>,

vignettes/sop.Rmd

@@ -26,7 +26,7 @@ with `smooth_intens()`, correcting background with
 `subtr_bg()`, and identifying spectra using an onboard reference
 library. Analyzed spectra can be shared with the Open Specy community.
 A Shiny app is available via `run_app()` or online at
-[http://www.openspecy.org](https://wincowger.shinyapps.io/OpenSpecy/).
+[https://openanalysis.org/openspecy/](https://openanalysis.org/openspecy/).
 
 This document outlines a common workflow for
 using Open Specy and highlights some topics that users are often
@@ -47,7 +47,7 @@ library(OpenSpecy)
 # Viewing and Sharing Spectra
 
 To get started with the Open Specy user interface, access
-[http://www.openspecy.org](https://wincowger.shinyapps.io/OpenSpecy/)
+[https://openanalysis.org/openspecy/](https://openanalysis.org/openspecy/)
 or start the Shiny GUI directly from R typing
 
 ```{r eval=FALSE}