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Merge branch 'master' into patch-20
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@deepakunni3
deepakunni3 authored Apr 18, 2024
2 parents bfc9f54 + c0ea3cc commit 36ffc15
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64 changes: 24 additions & 40 deletions _config.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -6596,26 +6596,29 @@ ontologies:
title: INCF KnowledgeSpace Portal
url: https://knowledge-space.org/index.php/pages/view/UBERON:0000061
build:
checkout: svn --ignore-externals co http://svn.code.sf.net/p/obo/svn/uberon/trunk
checkout: git clone https://github.com/obophenotype/uberon.git
email_cc: cjmungall@lbl.gov
infallible: 1
method: vcs
system: svn
system: git
canonical: uberon.owl
contact:
email: cjmungall@lbl.gov
github: cmungall
label: Chris Mungall
orcid: 0000-0002-6601-2165
dependencies:
- id: bfo
- id: bspo
- id: chebi
subset: uberon/chebi_import.owl
- id: cl
subset: uberon/cl_import.owl
- id: envo
- id: go
subset: uberon/go_import.owl
- id: nbo
- id: ncbitaxon
- id: omo
- id: pato
- id: pr
subset: uberon/pr_import.owl
- id: ro
depicted_by: https://raw.githubusercontent.com/jmcmurry/closed-illustrations/master/logos/uberon-logos/uberon_logo_black-banner.png
description: An integrated cross-species anatomy ontology covering animals and bridging
multiple species-specific ontologies
Expand Down Expand Up @@ -6654,43 +6657,24 @@ ontologies:
ontology_purl: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
page: https://github.com/INCATools/ontology-development-kit/issues/50
title: Uberon base ontology
- description: Uberon extended
id: uberon/ext.owl
mireots_from: cl
ontology_purl: http://purl.obolibrary.org/obo/uberon/ext.owl
title: Uberon edition that includes subsets of other ontologies and axioms connecting
to them
type: owl:Ontology
- description: Uberon edition that excludes external ontologies and most relations
format: obo
id: uberon/basic.obo
ontology_purl: http://purl.obolibrary.org/obo/uberon/basic.obo
id: uberon/uberon-basic.obo
ontology_purl: http://purl.obolibrary.org/obo/uberon/uberon-basic.obo
title: Uberon basic
type: obo-basic-ontology
- connects:
- id: uberon
- id: zfa
description: Taxonomic equivalence axioms connecting zebrafish-specific classes
to generic uberon counterparts
id: uberon/bridge/uberon-bridge-to-zfa.owl
ontology_purl: http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa.owl
page: https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies
title: Uberon bridge to ZFA
type: BridgeOntology
- connects:
- id: uberon
- id: ma
description: Taxonomic equivalence axioms connecting adult mouse specific classes
to generic uberon counterparts
id: uberon/bridge/uberon-bridge-to-ma.owl
ontology_purl: http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl
page: https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies
title: Uberon bridge to MA
type: BridgeOntology
- description: Extended uberon plus all metazoan ontologies
- description: Uberon plus all metazoan ontologies
id: uberon/collected-metazoan.owl
ontology_purl: http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl
page: https://obophenotype.github.io/uberon/combined_multispecies/
taxon: Metazoa
title: Uberon collected metazoan ontology
type: MergedOntology
- description: Uberon and all metazoan ontologies with redundant species-specific
terms removed
id: uberon/composite-metazoan.owl
ontology_purl: http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl
page: https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies
page: https://obophenotype.github.io/uberon/combined_multispecies/
taxon: Metazoa
title: Uberon composite metazoan ontology
type: MergedOntology
Expand All @@ -6705,8 +6689,8 @@ ontologies:
- emapa
- ehdaa2
ontology_purl: http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl
page: https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies
taxon: Metazoa
page: https://obophenotype.github.io/uberon/combined_multispecies/
taxon: Vertebrata
title: Uberon composite vertebrate ontology
type: MergedOntology
publications:
Expand Down
98 changes: 43 additions & 55 deletions registry/ontologies.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -9221,11 +9221,10 @@
}
],
"build": {
"checkout": "svn --ignore-externals co http://svn.code.sf.net/p/obo/svn/uberon/trunk",
"checkout": "git clone https://github.com/obophenotype/uberon.git",
"email_cc": "cjmungall@lbl.gov",
"infallible": 1,
"method": "vcs",
"system": "svn"
"system": "git"
},
"canonical": "uberon.owl",
"contact": {
Expand All @@ -9236,20 +9235,40 @@
},
"dependencies": [
{
"id": "chebi",
"subset": "uberon/chebi_import.owl"
"id": "bfo"
},
{
"id": "cl",
"subset": "uberon/cl_import.owl"
"id": "bspo"
},
{
"id": "chebi"
},
{
"id": "cl"
},
{
"id": "envo"
},
{
"id": "go"
},
{
"id": "nbo"
},
{
"id": "ncbitaxon"
},
{
"id": "omo"
},
{
"id": "go",
"subset": "uberon/go_import.owl"
"id": "pato"
},
{
"id": "pr"
},
{
"id": "pr",
"subset": "uberon/pr_import.owl"
"id": "ro"
}
],
"depicted_by": "https://raw.githubusercontent.com/jmcmurry/closed-illustrations/master/logos/uberon-logos/uberon_logo_black-banner.png",
Expand Down Expand Up @@ -9302,59 +9321,28 @@
"page": "https://github.com/INCATools/ontology-development-kit/issues/50",
"title": "Uberon base ontology"
},
{
"description": "Uberon extended",
"id": "uberon/ext.owl",
"mireots_from": "cl",
"ontology_purl": "http://purl.obolibrary.org/obo/uberon/ext.owl",
"title": "Uberon edition that includes subsets of other ontologies and axioms connecting to them",
"type": "owl:Ontology"
},
{
"description": "Uberon edition that excludes external ontologies and most relations",
"format": "obo",
"id": "uberon/basic.obo",
"ontology_purl": "http://purl.obolibrary.org/obo/uberon/basic.obo",
"id": "uberon/uberon-basic.obo",
"ontology_purl": "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo",
"title": "Uberon basic",
"type": "obo-basic-ontology"
},
{
"connects": [
{
"id": "uberon"
},
{
"id": "zfa"
}
],
"description": "Taxonomic equivalence axioms connecting zebrafish-specific classes to generic uberon counterparts",
"id": "uberon/bridge/uberon-bridge-to-zfa.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa.owl",
"page": "https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies",
"title": "Uberon bridge to ZFA",
"type": "BridgeOntology"
},
{
"connects": [
{
"id": "uberon"
},
{
"id": "ma"
}
],
"description": "Taxonomic equivalence axioms connecting adult mouse specific classes to generic uberon counterparts",
"id": "uberon/bridge/uberon-bridge-to-ma.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl",
"page": "https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies",
"title": "Uberon bridge to MA",
"type": "BridgeOntology"
"description": "Uberon plus all metazoan ontologies",
"id": "uberon/collected-metazoan.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl",
"page": "https://obophenotype.github.io/uberon/combined_multispecies/",
"taxon": "Metazoa",
"title": "Uberon collected metazoan ontology",
"type": "MergedOntology"
},
{
"description": "Extended uberon plus all metazoan ontologies",
"description": "Uberon and all metazoan ontologies with redundant species-specific terms removed",
"id": "uberon/composite-metazoan.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl",
"page": "https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies",
"page": "https://obophenotype.github.io/uberon/combined_multispecies/",
"taxon": "Metazoa",
"title": "Uberon composite metazoan ontology",
"type": "MergedOntology"
Expand All @@ -9372,8 +9360,8 @@
"ehdaa2"
],
"ontology_purl": "http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl",
"page": "https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies",
"taxon": "Metazoa",
"page": "https://obophenotype.github.io/uberon/combined_multispecies/",
"taxon": "Vertebrata",
"title": "Uberon composite vertebrate ontology",
"type": "MergedOntology"
}
Expand Down
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