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  • agmin Public

    Forked from clindet/agmin

    A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.

    R 1 Other Updated May 9, 2024
  • clindet Public

    Forked from clindet/clindet

    A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.

    Python GNU General Public License v3.0 Updated May 4, 2024
  • ASCAT.sc Public

    Forked from VanLoo-lab/ASCAT.sc
    HTML GNU General Public License v3.0 Updated May 4, 2023
  • maftools Public

    Forked from PoisonAlien/maftools

    Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

    R MIT License Updated Mar 29, 2023
  • battenberg Public

    Forked from Wedge-lab/battenberg

    Battenberg R package for subclonal copynumber estimation

    R GNU Affero General Public License v3.0 Updated Feb 21, 2023
  • CaVEMan Public

    Forked from cancerit/CaVEMan

    SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib

    C GNU Affero General Public License v3.0 Updated Sep 12, 2022
  • This repo stored the files of my blog

    HTML MIT License Updated Dec 3, 2020
  • BRASS Public

    Forked from cancerit/BRASS

    Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.

    Perl GNU Affero General Public License v3.0 Updated Jul 12, 2020
  • functions to read data exported from Web of Science into R

    R Updated Nov 6, 2019
  • papershare Public

    https://psclub.netlify.com/

    CSS Updated Sep 14, 2018
  • Sirens_song Public

    HTML Updated Jun 16, 2018
  • plmc Public

    Forked from debbiemarkslab/plmc

    Inference of couplings in proteins and RNAs from sequence variation

    C MIT License Updated May 23, 2018
  • 30-days Public

    Updated May 19, 2018
  • TRF2GFF Public

    Forked from Adamtaranto/TRF2GFF

    Convert Tandem Repeat Finder dat file output into gff3 format

    Python GNU General Public License v3.0 Updated Sep 19, 2017
  • zylblog Public

    Updated Sep 17, 2017
  • website code

    HTML Updated Sep 3, 2017
  • Gource Public

    Forked from acaudwell/Gource

    software version control visualization

    C++ GNU General Public License v3.0 Updated Apr 19, 2017
  • neuralart Public

    Forked from kaishengtai/neuralart

    An implementation of the paper 'A Neural Algorithm of Artistic Style'.

    Lua MIT License Updated Mar 5, 2017
  • ggpy Public

    Forked from yhat/ggpy

    ggplot port for python

    Python BSD 2-Clause "Simplified" License Updated Mar 3, 2017
  • A list of design resources.

    Updated Feb 19, 2017
  • Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.

    PHP Other Updated Dec 16, 2016