Exploratory Data Analysis

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sonali-bioc edited this page Feb 14, 2014 · 1 revision

We have done some primary exploratory data analysis on the Normal and Tumor Sample Datasets using binnedCounts.R
plotbinnedCounts.R

reads per bin of 10k bases, with noise at telomeres and centromere: ![] (https://raw.github.com/Bioconductor/copy-number-analysis/master/image/count2.png)
both axes modified: y axis is zoomed in, x is average reads per base in each 10k bin: ![] (https://raw.github.com/Bioconductor/copy-number-analysis/master/image/normalised-count2.png)