SegSeq

SegSeq

We have been told (February 2014) that SegSeq will soon appear on github accompanied by instructions for use with matched tumor/normal low-coverage bam files.

Meanwhile, this description at the Broad may be of interest.

Note, however, that the instructions, examples, and the paper describe only the use of SegSeq with fastq files and the arachne assembler/aligner. We have not yet been able to run SegSeq with our test data, the aformentioned single-chromosome low-coverage bam files.