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@IAWG-CSBC-PSON

Image Analysis Working Group (CSBC/PS-ON)

Image Analysis Working Group of the Cancer Systems Biology Consortium & Physical Sciences-Oncology Network

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  1. hack2022-02-segmentation hack2022-02-segmentation Public

    Challenge 2: Towards artefact-robust cell segmentation models

    MATLAB 2

  2. hack2022-08-thumbnails hack2022-08-thumbnails Public

    Challenge 8: Unsupervised thumbnail generation for whole-slide multiplexed microscopy images

    Python 2 1

  3. Segmentation-challenge Segmentation-challenge Public

    Solutions to set of image segmentation challenges

    Jupyter Notebook 1

  4. morpho-type morpho-type Public archive

    Prediction of cell type from morphology features and neighborhood information

    Jupyter Notebook 1 2

  5. registration-challenge registration-challenge Public

    Code to support the registration Hackathon

    Python 1 3

  6. pd1-asymmetry pd1-asymmetry Public

    PD1 asymmetry challenge

    Jupyter Notebook 1 1

Repositories

Showing 10 of 19 repositories
  • Segmentation-challenge Public

    Solutions to set of image segmentation challenges

    IAWG-CSBC-PSON/Segmentation-challenge’s past year of commit activity
    Jupyter Notebook 1 AGPL-3.0 0 0 0 Updated Oct 29, 2024
  • hack2022-05-cross-talk Public

    Challenge 5: Detect and correct spatial cross-talk

    IAWG-CSBC-PSON/hack2022-05-cross-talk’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 11, 2024
  • hack2022-11-cosmetic Public

    Challenge 11: Automated Artefact Removal in Multiplexed Fluorescence Images for Cosmetic Purposes

    IAWG-CSBC-PSON/hack2022-11-cosmetic’s past year of commit activity
    0 MIT 0 1 0 Updated Oct 30, 2023
  • hack2022-10-neuroglancer Public

    Challenge 10: 3D Volume Visualization through Neuroglancer

    IAWG-CSBC-PSON/hack2022-10-neuroglancer’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Oct 30, 2023
  • hack2022-09-galaxy Public

    Challenge 9: End-to-End Image Processing and Analysis with Galaxy

    IAWG-CSBC-PSON/hack2022-09-galaxy’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 30, 2023
  • hack2022-08-thumbnails Public

    Challenge 8: Unsupervised thumbnail generation for whole-slide multiplexed microscopy images

    IAWG-CSBC-PSON/hack2022-08-thumbnails’s past year of commit activity
    Python 2 MIT 1 7 1 Updated Oct 30, 2023
  • hack2022-07-tb-scale Public

    Challenge 7: Enabling Image Analysis for TB-scale data

    IAWG-CSBC-PSON/hack2022-07-tb-scale’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 30, 2023
  • hack2022-06-viz-comp Public

    Challenge 6: Visual Comparison of Single-Cell Clustering Results

    IAWG-CSBC-PSON/hack2022-06-viz-comp’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 5 Updated Oct 30, 2023
  • hack2022-04-vae Public

    Challenge 4: Variational Autoencoder for single cell image feature extraction

    IAWG-CSBC-PSON/hack2022-04-vae’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 30, 2023
  • hack2022-01-artifacts Public

    Challenge 1: Automated Detection of Microscopy Artifacts

    IAWG-CSBC-PSON/hack2022-01-artifacts’s past year of commit activity
    Python 1 MIT 1 0 8 Updated Oct 30, 2023
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