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Speed improvements when writing XML containing multiple wells #11

Merged
merged 16 commits into from
Sep 10, 2024
Merged

Speed improvements when writing XML containing multiple wells #11

merged 16 commits into from
Sep 10, 2024

Commits on Mar 24, 2024

  1. first test to improve runtime by not recalculating coord mask for eac… 

    …h cell set
    @sophiamaedler
    sophiamaedler committed Mar 24, 2024
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Commits on Apr 23, 2024

  1. initial speedup commit

    @sophiamaedler
    sophiamaedler committed Apr 23, 2024
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  2. add multithreading capabilities for processing cell sets

    @sophiamaedler
    sophiamaedler committed Apr 23, 2024
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Commits on Jul 3, 2024

  1. ensure mutliprocessing workers are initialized from the correct context 

    ensures multithreading compatibility across operating systems
    @sophiamaedler
    sophiamaedler committed Jul 3, 2024
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Commits on Jul 9, 2024

  1. update selection of context

    @sophiamaedler
    sophiamaedler committed Jul 9, 2024
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  2. ensure multiprocessing is only turned on if more than one thread is p… 

    …rovided
    @sophiamaedler
    sophiamaedler committed Jul 9, 2024
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Commits on Jul 10, 2024

  1. make naming conventions more clear 

    use multi processing for cellsets
Each of these processes can then have multiple threads underneath it
    @sophiamaedler
    sophiamaedler committed Jul 10, 2024
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Commits on Jul 12, 2024

  1. fix old variable call

    @sophiamaedler
    sophiamaedler committed Jul 12, 2024
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Commits on Jul 30, 2024

  1. remove sparcscore dependency

    @GeorgWa
    GeorgWa committed Jul 30, 2024
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  2. update testcases

    @GeorgWa
    GeorgWa committed Jul 30, 2024
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  3. trigger PR checks on all branches

    @GeorgWa
    GeorgWa committed Jul 30, 2024
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  4. workflow dispatch

    @GeorgWa
    GeorgWa committed Jul 30, 2024
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  5. debug

    @GeorgWa
    GeorgWa committed Jul 30, 2024
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  6. fix bugs

    @GeorgWa
    GeorgWa committed Jul 30, 2024
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Commits on Aug 27, 2024

  1. Merge pull request #13 from MannLabs/package-improvments 

    Update repo and testcases
    @sophiamaedler
    sophiamaedler authored Aug 27, 2024
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Commits on Sep 5, 2024

  1. ensure numpy version<2.0.0

    @sophiamaedler
    sophiamaedler committed Sep 5, 2024
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