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Full package review for v0.2.0 #341

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Jul 10, 2024
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81bb6d5
Updates to data_from_epireview vignette
joshwlambert Jul 9, 2024
0b29aca
fix ebola delay variable in data_from_epireview
joshwlambert Jul 9, 2024
7c6f9da
clarify subsetting of multi-row entries in data_from_epireview
joshwlambert Jul 9, 2024
e9002b9
clarify wording on missing probability distribution in data_from_epir…
joshwlambert Jul 9, 2024
9d25944
add info on summary stat conversion in data_from_epireview
joshwlambert Jul 9, 2024
7e5fbdf
remove empty limitations section from data_from_epireview
joshwlambert Jul 9, 2024
588b8dd
Update URL in inst/CITATION
joshwlambert Jul 9, 2024
f38eca0
Return directly from switch() in as.function.epidist()
joshwlambert Jul 9, 2024
94f2433
Return directly from data.frame() in as.data.frame.epidist()
joshwlambert Jul 9, 2024
1902b92
Remove dev/ from URL in print.multi_epidist()
joshwlambert Jul 9, 2024
1275ce1
Remove unnecessary sprintf() from format.epidist()
joshwlambert Jul 9, 2024
c68c9ef
Improve wording in README intro
joshwlambert Jul 9, 2024
2f2d9d9
Automatic readme update
actions-user Jul 9, 2024
0e74977
Remove mention of loading {distributional} from epiparameter.Rmd
joshwlambert Jul 9, 2024
3144192
Improve wording on epiparameter library in epiparameter.Rmd
joshwlambert Jul 9, 2024
b9f2e6f
Remove technical note on epidist list printing in epiparameter.Rmd
joshwlambert Jul 9, 2024
646b158
print tail of appended db in epiparameter.Rmd
joshwlambert Jul 9, 2024
be14306
Clarify adding entries to database locally in epiparameter.Rmd
joshwlambert Jul 9, 2024
b0676b6
Improve wording on contributing in epiparameter.Rmd
joshwlambert Jul 9, 2024
30130cf
Remove text on generic functions in extract_convert.Rmd
joshwlambert Jul 9, 2024
be5bab3
add link to database vignette in README
joshwlambert Jul 9, 2024
2af686c
update google sheet link in README
joshwlambert Jul 9, 2024
b6b3787
refactor epiparameter.Rmd by reducing technical information on classe…
joshwlambert Jul 9, 2024
d74c15d
added @seealso tags linking convert_params_to_summary_stats and conve…
joshwlambert Jul 9, 2024
ce20e9c
Automatic readme update
actions-user Jul 9, 2024
1d812e6
updated WORDLIST
joshwlambert Jul 10, 2024
850b716
updated print.multi_epidist snapshots
joshwlambert Jul 10, 2024
e573593
add info on WHO workshop to NEWS.md
joshwlambert Jul 10, 2024
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Improve wording on contributing in epiparameter.Rmd
Co-authored-by: James Azam <james.m.azam@gmail.com>
joshwlambert and jamesmbaazam authored Jul 9, 2024
commit b0676b6ddb70825e34d5c7120cdd31435a72d640
2 changes: 1 addition & 1 deletion vignettes/epiparameter.Rmd
Original file line number Diff line number Diff line change
@@ -156,7 +156,7 @@ tail(new_db, n = 3)

Note that this only adds the parameters to the library in the environment, and does not save to the database file in the package. Hence, if you restart your R session, you will lose the changes.

The library of epidemiological parameters is a living database, as new studies are published we hope to incorporate these. Due to the large time requirement of searching for and recording parameters in the database we welcome others to add parameters by either making a pull request to the package or adding information to the contributing spreadsheet. These will be incorporated into the database by the package maintainers. See the [Data Collation and Synthesis Protocol](https://epiverse-trace.github.io/epiparameter/articles/data_protocol.html) vignette on information about contributing to the library of epidemiological parameters.
The library of epidemiological parameters is a living database, so as new studies are published we hope to incorporate these. Searching for and recording parameters in the database is extremely time-consuming, so we welcome contributions of new parameters by either making a pull request to the package or adding information to the contributing spreadsheet. These will be incorporated into the database by the package maintainers and your contributions will be acknowledged. See the [Data Collation and Synthesis Protocol](https://epiverse-trace.github.io/epiparameter/articles/data_protocol.html) vignette on information about contributing to the library of epidemiological parameters.

## Distribution functions