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Full package review for v0.2.0 #341

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Jul 10, 2024
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81bb6d5
Updates to data_from_epireview vignette
joshwlambert Jul 9, 2024
0b29aca
fix ebola delay variable in data_from_epireview
joshwlambert Jul 9, 2024
7c6f9da
clarify subsetting of multi-row entries in data_from_epireview
joshwlambert Jul 9, 2024
e9002b9
clarify wording on missing probability distribution in data_from_epir…
joshwlambert Jul 9, 2024
9d25944
add info on summary stat conversion in data_from_epireview
joshwlambert Jul 9, 2024
7e5fbdf
remove empty limitations section from data_from_epireview
joshwlambert Jul 9, 2024
588b8dd
Update URL in inst/CITATION
joshwlambert Jul 9, 2024
f38eca0
Return directly from switch() in as.function.epidist()
joshwlambert Jul 9, 2024
94f2433
Return directly from data.frame() in as.data.frame.epidist()
joshwlambert Jul 9, 2024
1902b92
Remove dev/ from URL in print.multi_epidist()
joshwlambert Jul 9, 2024
1275ce1
Remove unnecessary sprintf() from format.epidist()
joshwlambert Jul 9, 2024
c68c9ef
Improve wording in README intro
joshwlambert Jul 9, 2024
2f2d9d9
Automatic readme update
actions-user Jul 9, 2024
0e74977
Remove mention of loading {distributional} from epiparameter.Rmd
joshwlambert Jul 9, 2024
3144192
Improve wording on epiparameter library in epiparameter.Rmd
joshwlambert Jul 9, 2024
b9f2e6f
Remove technical note on epidist list printing in epiparameter.Rmd
joshwlambert Jul 9, 2024
646b158
print tail of appended db in epiparameter.Rmd
joshwlambert Jul 9, 2024
be14306
Clarify adding entries to database locally in epiparameter.Rmd
joshwlambert Jul 9, 2024
b0676b6
Improve wording on contributing in epiparameter.Rmd
joshwlambert Jul 9, 2024
30130cf
Remove text on generic functions in extract_convert.Rmd
joshwlambert Jul 9, 2024
be5bab3
add link to database vignette in README
joshwlambert Jul 9, 2024
2af686c
update google sheet link in README
joshwlambert Jul 9, 2024
b6b3787
refactor epiparameter.Rmd by reducing technical information on classe…
joshwlambert Jul 9, 2024
d74c15d
added @seealso tags linking convert_params_to_summary_stats and conve…
joshwlambert Jul 9, 2024
ce20e9c
Automatic readme update
actions-user Jul 9, 2024
1d812e6
updated WORDLIST
joshwlambert Jul 10, 2024
850b716
updated print.multi_epidist snapshots
joshwlambert Jul 10, 2024
e573593
add info on WHO workshop to NEWS.md
joshwlambert Jul 10, 2024
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Automatic readme update
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actions-user committed Jul 9, 2024

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commit ce20e9c484a08966b23d8cc89368f94005b6a0ba
7 changes: 6 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
@@ -115,6 +115,11 @@ epidists
This results a list of database entries. Each entry of the library is an
`<epidist>` object.

Alternatively, the library of epiparameters can be viewed as a vignette
locally (`vignette("database", package = "epiparameter")`) or on the
[{epiparameter}
website](https://epiverse-trace.github.io/epiparameter/articles/database.html).

The results can be filtered by disease and epidemiological distribution.
Here we set `single_epidist = TRUE` as we only want a single database
entry returned, and by default (`single_epidist = FALSE`) it will return
@@ -227,7 +232,7 @@ or the median and range of the data. This can be done for:
If you would like to contribute to the different epidemiological
parameters stored in the `{epiparameter}` package, you can add data to a
public [google
sheet](https://docs.google.com/spreadsheets/d/1zVpaaKkQ7aeMdRN2r0p-W4d2TtccL5HcIOp_w-lfkEQ/edit?usp=sharing).
sheet](https://docs.google.com/spreadsheets/d/1eCL3n_woseg5Npu7XD7TcuNoLUIhMBu8ZoLCkVdATUE/edit?usp=sharing).
This spreadsheet contains two example entries as a guide to what fields
can accept. We are monitoring this sheet for new entries that will
subsequently be included in the package.