Skip to content

Installation

Jump to bottom
Robert J. Gifford edited this page Oct 2, 2024 · 3 revisions

If you have not done so already, install the GLUE software framework by following the installation instructions on the GLUE web site:

Download the Hepadnavirus-GLUE repository, navigate into the top-level directory, and start the GLUE command line interpreter.

Steps

  1. Build the Core Project:
   Mode path: /
   GLUE> run file buildCoreProject.glue

This will build the base project, which contains a minimal set of feature definitions, clade categories, reference sequences, and alignments.

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Native Installation
  5. Docker Installation

GLUE Concepts

  1. Project Data Model
  2. Command Layer
  3. Modules
  4. Alignments
  5. Variations
  6. Scripting Layer

Core Project

  1. Schema Extensions
  2. Genome Features
  3. Sequence Data
  4. Reference Sequences
  5. Multiple Sequence Alignments
  6. Constrained Alignment Tree
  7. Phylogenetic Trees

EVE Extension Project

  1. Background
  2. Schema Extensions
  3. Sequences
  4. Reference Sequences
  5. Multiple Sequence Alignments
  6. Paleovirus Nomenclature

Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference
  4. ICTV Hepadnaviridae
Clone this wiki locally