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Update mapping files for ocular phenotypes #78

Merged
merged 6 commits into from
Jun 24, 2024
Merged

Update mapping files for ocular phenotypes #78

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b3656ee
Update CategoryMap.conf for "dilated" and "closed" values
marinak-ebi May 24, 2024
b70735e
Update MergeParameterList.txt for new EYE parameters
marinak-ebi May 24, 2024
edfb83c
Update CategoryRemapping.tsv for new EYE parameters (copy 1)
marinak-ebi May 24, 2024
e97e6dc
Update CategoryRemapping.tsv for new EYE parameters (copy 2)
marinak-ebi May 24, 2024
88511de
Add eye_patch.py, a temporary module for sync with IMPRESS
marinak-ebi May 24, 2024
03ea4a8
Fix typo
marinak-ebi May 24, 2024
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4 changes: 4 additions & 0 deletions ...lts stats pipeline/DRrequiredAgeing/DRrequiredAgeingPackage/inst/extdata/CategoryMap.conf
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🙏🏻 this one is new! Good catch.

Original file line number Diff line number Diff line change
Expand Up @@ -10,4 +10,8 @@ no data left eye, present right eye:present right eye
no data right eye, present left eye:present left eye
no data left eye, right eye abnormal:right eye abnormal
no data right eye, left eye abnormal:left eye abnormal
no data right eye, left eye dilated:left eye dilated
no data left eye, right eye dilated:right eye dilated
no data right eye, left eye closed:left eye closed
no data left eye, right eye closed:right eye closed
Is_this_file_finished_with_a_new_line_question_mark:0
276 changes: 276 additions & 0 deletions ...ats pipeline/DRrequiredAgeing/DRrequiredAgeingPackage/inst/extdata/MergeParameterList.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -562,3 +562,279 @@ BCMLA_EYE_083_001
BCMLA_EYE_084_001
BCMLA_EYE_085_001
BCMLA_EYE_086_001
TCPLA_EYE_080_001
TCPLA_EYE_085_001
TCPLA_EYE_010_001
TCPLA_EYE_082_001
TCPLA_EYE_019_001
TCPLA_EYE_014_001
TCPLA_EYE_081_001
TCPLA_EYE_025_001
TCPLA_EYE_002_001
TCPLA_EYE_018_001
TCPLA_EYE_011_001
TCPLA_EYE_016_001
TCPLA_EYE_005_001
TCPLA_EYE_017_001
TCPLA_EYE_083_001
TCPLA_EYE_084_001
TCPLA_EYE_026_001
TCPLA_EYE_027_001
TCPLA_EYE_023_001
TCPLA_EYE_024_001
TCPLA_EYE_004_001
TCPLA_EYE_007_001
TCPLA_EYE_015_001
TCPLA_EYE_013_001
TCPLA_EYE_008_001
TCPLA_EYE_006_001
TCPLA_EYE_086_001
TCPLA_EYE_009_001
TCPLA_EYE_012_001
TCPLA_EYE_003_001
UCDLA_EYE_011_001
UCDLA_EYE_082_001
UCDLA_EYE_083_001
UCDLA_EYE_002_001
UCDLA_EYE_084_001
UCDLA_EYE_023_001
UCDLA_EYE_015_001
UCDLA_EYE_004_001
UCDLA_EYE_027_001
UCDLA_EYE_013_001
UCDLA_EYE_016_001
UCDLA_EYE_009_001
UCDLA_EYE_080_001
UCDLA_EYE_003_001
UCDLA_EYE_007_001
UCDLA_EYE_085_001
UCDLA_EYE_086_001
UCDLA_EYE_018_001
UCDLA_EYE_008_001
UCDLA_EYE_012_001
UCDLA_EYE_081_001
UCDLA_EYE_010_001
UCDLA_EYE_019_001
UCDLA_EYE_024_001
UCDLA_EYE_026_001
UCDLA_EYE_005_001
UCDLA_EYE_017_001
UCDLA_EYE_025_001
UCDLA_EYE_014_001
UCDLA_EYE_006_001
ICSLA_EYE_015_001
ICSLA_EYE_003_001
ICSLA_EYE_010_001
ICSLA_EYE_006_001
ICSLA_EYE_084_001
ICSLA_EYE_005_001
ICSLA_EYE_085_001
ICSLA_EYE_009_001
ICSLA_EYE_017_001
ICSLA_EYE_027_001
ICSLA_EYE_019_001
ICSLA_EYE_018_001
ICSLA_EYE_013_001
ICSLA_EYE_014_001
ICSLA_EYE_083_001
ICSLA_EYE_002_001
ICSLA_EYE_012_001
ICSLA_EYE_007_001
ICSLA_EYE_086_001
ICSLA_EYE_026_001
ICSLA_EYE_008_001
ICSLA_EYE_016_001
ICSLA_EYE_080_001
ICSLA_EYE_082_001
ICSLA_EYE_024_001
ICSLA_EYE_081_001
ICSLA_EYE_025_001
ICSLA_EYE_023_001
ICSLA_EYE_004_001
ICSLA_EYE_011_001
NINGLA_EYE_081_001
NINGLA_EYE_014_001
NINGLA_EYE_024_001
NINGLA_EYE_085_001
NINGLA_EYE_025_001
NINGLA_EYE_017_001
NINGLA_EYE_010_001
NINGLA_EYE_027_001
NINGLA_EYE_002_001
NINGLA_EYE_008_001
NINGLA_EYE_009_001
NINGLA_EYE_016_001
NINGLA_EYE_082_001
NINGLA_EYE_086_001
NINGLA_EYE_006_001
NINGLA_EYE_022_001
NINGLA_EYE_004_001
NINGLA_EYE_020_001
NINGLA_EYE_011_001
NINGLA_EYE_019_001
NINGLA_EYE_083_001
NINGLA_EYE_080_001
NINGLA_EYE_018_001
NINGLA_EYE_026_001
NINGLA_EYE_012_001
NINGLA_EYE_003_001
NINGLA_EYE_084_001
NINGLA_EYE_013_001
NINGLA_EYE_005_001
NINGLA_EYE_023_001
NINGLA_EYE_021_001
NINGLA_EYE_007_001
NINGLA_EYE_015_001
KMPCLA_EYE_013_001
KMPCLA_EYE_083_001
KMPCLA_EYE_025_001
KMPCLA_EYE_002_001
KMPCLA_EYE_005_001
KMPCLA_EYE_008_001
KMPCLA_EYE_084_001
KMPCLA_EYE_018_001
KMPCLA_EYE_024_001
KMPCLA_EYE_010_001
KMPCLA_EYE_017_001
KMPCLA_EYE_011_001
KMPCLA_EYE_020_001
KMPCLA_EYE_085_001
KMPCLA_EYE_015_001
KMPCLA_EYE_003_001
KMPCLA_EYE_026_001
KMPCLA_EYE_004_001
KMPCLA_EYE_027_001
KMPCLA_EYE_021_001
KMPCLA_EYE_014_001
KMPCLA_EYE_081_001
KMPCLA_EYE_019_001
KMPCLA_EYE_080_001
KMPCLA_EYE_016_001
KMPCLA_EYE_012_001
KMPCLA_EYE_006_001
KMPCLA_EYE_022_001
KMPCLA_EYE_023_001
KMPCLA_EYE_086_001
KMPCLA_EYE_009_001
KMPCLA_EYE_082_001
KMPCLA_EYE_007_001
TCPLA_EYE_002_001
TCPLA_EYE_003_001
TCPLA_EYE_004_001
TCPLA_EYE_005_001
TCPLA_EYE_006_001
TCPLA_EYE_007_001
TCPLA_EYE_008_001
TCPLA_EYE_009_001
TCPLA_EYE_010_001
TCPLA_EYE_011_001
TCPLA_EYE_012_001
TCPLA_EYE_013_001
TCPLA_EYE_014_001
TCPLA_EYE_015_001
TCPLA_EYE_016_001
TCPLA_EYE_017_001
TCPLA_EYE_018_001
TCPLA_EYE_019_001
TCPLA_EYE_023_001
TCPLA_EYE_024_001
TCPLA_EYE_025_001
TCPLA_EYE_026_001
TCPLA_EYE_027_001
TCPLA_EYE_080_001
TCPLA_EYE_081_001
TCPLA_EYE_082_001
TCPLA_EYE_083_001
TCPLA_EYE_084_001
TCPLA_EYE_085_001
TCPLA_EYE_086_001
UCDLA_EYE_002_001
UCDLA_EYE_003_001
UCDLA_EYE_004_001
UCDLA_EYE_005_001
UCDLA_EYE_006_001
UCDLA_EYE_007_001
UCDLA_EYE_008_001
UCDLA_EYE_009_001
UCDLA_EYE_010_001
UCDLA_EYE_011_001
UCDLA_EYE_012_001
UCDLA_EYE_013_001
UCDLA_EYE_014_001
UCDLA_EYE_015_001
UCDLA_EYE_016_001
UCDLA_EYE_017_001
UCDLA_EYE_018_001
UCDLA_EYE_019_001
UCDLA_EYE_023_001
UCDLA_EYE_024_001
UCDLA_EYE_025_001
UCDLA_EYE_026_001
UCDLA_EYE_027_001
UCDLA_EYE_080_001
UCDLA_EYE_081_001
UCDLA_EYE_082_001
UCDLA_EYE_083_001
UCDLA_EYE_084_001
UCDLA_EYE_085_001
UCDLA_EYE_086_001
ICSLA_EYE_002_001
ICSLA_EYE_003_001
ICSLA_EYE_004_001
ICSLA_EYE_005_001
ICSLA_EYE_006_001
ICSLA_EYE_007_001
ICSLA_EYE_008_001
ICSLA_EYE_009_001
ICSLA_EYE_010_001
ICSLA_EYE_011_001
ICSLA_EYE_012_001
ICSLA_EYE_013_001
ICSLA_EYE_014_001
ICSLA_EYE_015_001
ICSLA_EYE_016_001
ICSLA_EYE_017_001
ICSLA_EYE_018_001
ICSLA_EYE_019_001
ICSLA_EYE_023_001
ICSLA_EYE_024_001
ICSLA_EYE_025_001
ICSLA_EYE_026_001
ICSLA_EYE_027_001
ICSLA_EYE_080_001
ICSLA_EYE_081_001
ICSLA_EYE_082_001
ICSLA_EYE_083_001
ICSLA_EYE_084_001
ICSLA_EYE_085_001
ICSLA_EYE_086_001
KMPCLA_EYE_002_001
KMPCLA_EYE_003_001
KMPCLA_EYE_004_001
KMPCLA_EYE_005_001
KMPCLA_EYE_006_001
KMPCLA_EYE_007_001
KMPCLA_EYE_008_001
KMPCLA_EYE_009_001
KMPCLA_EYE_010_001
KMPCLA_EYE_011_001
KMPCLA_EYE_012_001
KMPCLA_EYE_013_001
KMPCLA_EYE_014_001
KMPCLA_EYE_015_001
KMPCLA_EYE_016_001
KMPCLA_EYE_017_001
KMPCLA_EYE_018_001
KMPCLA_EYE_019_001
KMPCLA_EYE_023_001
KMPCLA_EYE_024_001
KMPCLA_EYE_025_001
KMPCLA_EYE_026_001
KMPCLA_EYE_027_001
KMPCLA_EYE_080_001
KMPCLA_EYE_081_001
KMPCLA_EYE_082_001
KMPCLA_EYE_083_001
KMPCLA_EYE_084_001
KMPCLA_EYE_085_001
KMPCLA_EYE_086_001
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