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24 Open 36 Closed
24 Open 36 Closed
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Issues list

Get rid of ReplaceWordInFile function refactor Restructure code, but not its functionality
#95 opened Sep 11, 2024 by marinak-ebi
3 tasks
@marinak-ebi
Refactor updateImpress to use newly generated metadataParameters.csv instead of updating DRrequiredAgeing package locally refactor Restructure code, but not its functionality
#94 opened Sep 11, 2024 by marinak-ebi
2 tasks
@marinak-ebi
Get rid of list of genes ignoromeGenes that is not in use anymore refactor Restructure code, but not its functionality
#93 opened Aug 21, 2024 by marinak-ebi
@marinak-ebi
Get rid of hardcoded GitHub link refactor Restructure code, but not its functionality
#92 opened Aug 19, 2024 by marinak-ebi
@marinak-ebi
Move orchestration from inside the pipeline to an external layer refactor Restructure code, but not its functionality
#91 opened Aug 13, 2024 by marinak-ebi
2 of 4 tasks
@marinak-ebi
1
Migrate from Conda refactor Restructure code, but not its functionality
#90 opened Aug 13, 2024 by marinak-ebi
3 tasks
@marinak-ebi
Get rid of EquationMap.conf and code associated with the file refactor Restructure code, but not its functionality
#88 opened Jul 29, 2024 by marinak-ebi
3 tasks done
1
@marinak-ebi
Write script that run both statistical and annotation pipeline docs Create documentation refactor Restructure code, but not its functionality
#84 opened Jul 19, 2024 by marinak-ebi
2 tasks done
1
@marinak-ebi
Upgrade to R version 4.4 refactor Restructure code, but not its functionality
#83 opened Jul 8, 2024 by marinak-ebi
@marinak-ebi
Ocular phenotypes LA data still go through the analysis bug Something isn't working
#77 opened May 13, 2024 by marinak-ebi
2 tasks done
1
@marinak-ebi
Remove unused code refactor Restructure code, but not its functionality
#75 opened Apr 16, 2024 by marinak-ebi
13 tasks done
1
@marinak-ebi
Remove duplications of CategoryRemapping.tsv refactor Restructure code, but not its functionality
#66 opened Apr 2, 2024 by marinak-ebi
@marinak-ebi
Consider using SSD instead of HDD enhancement New feature or request refactor Restructure code, but not its functionality
#57 opened Mar 19, 2024 by marinak-ebi
@marinak-ebi
Automatically check exit status of SLURM jobs refactor Restructure code, but not its functionality slurm
#52 opened Mar 12, 2024 by marinak-ebi
@marinak-ebi
Measure execution time of annotation pipeline refactor Restructure code, but not its functionality
#51 opened Mar 12, 2024 by marinak-ebi
@marinak-ebi
Enhance MP term field enhancement New feature or request
#45 opened Mar 5, 2024 by marinak-ebi
3 tasks
@marinak-ebi
Increase log granularity refactor Restructure code, but not its functionality
#44 opened Mar 4, 2024 by marinak-ebi
@marinak-ebi
Write down protocol for statistical pipeline output comparison docs Create documentation refactor Restructure code, but not its functionality
#42 opened Mar 4, 2024 by marinak-ebi
@marinak-ebi
Write instructions to recreate environment from scratch docs Create documentation refactor Restructure code, but not its functionality
#41 opened Mar 4, 2024 by marinak-ebi
1
@marinak-ebi
Check if HEM statistical analysis is being done by using only male WT research Investigate statistical part
#38 opened Feb 21, 2024 by ficolo
@marinak-ebi
1
Migrate dependency installation instructions docs Create documentation refactor Restructure code, but not its functionality
#37 opened Feb 19, 2024 by marinak-ebi
6 tasks done
1
@marinak-ebi
Get rid of installation from GitHub refactor Restructure code, but not its functionality
#34 opened Feb 2, 2024 by marinak-ebi
@marinak-ebi
Remove Windows OS specific functions enhancement New feature or request
#25 opened Dec 21, 2023 by marinak-ebi
2 tasks
@marinak-ebi
Tweak the stats pipeline to cope with the low samples in ABR procedure enhancement New feature or request
#15 opened Aug 17, 2020 by Hamedhm 20200619
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