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318 update for tes compliance #1026

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318 update for tes compliance

318 update for tes compliance #1026

GitHub Actions / JUnit Test Report failed Sep 17, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: default 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b151883b2e0c06488c527e353081389d.nf` [golden_cantor] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[fc/d52aac] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[a6/c1173c] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[69/a6f8a0] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[28/154c4d] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[43/6a41ef] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[29/fc5571] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[26/7d2aff] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[c8/1b9132] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[2b/593421] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[3b/97e745] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[d8/32a24f] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[4c/f33547] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[3f/84d70c] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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