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318 update for tes compliance #1026

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318 update for tes compliance

318 update for tes compliance #1026

GitHub Actions / JUnit Test Report failed Sep 17, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --download_method sratools 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-775fab53cb4a02a15d51ffbf8d902e18.nf` [curious_roentgen] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[28/acef0b] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[25/ef41e0] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[e7/4ad009] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[0f/d42af8] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[68/d210d7] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[01/b82bfb] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[89/448bd7] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS (ncbi-settings)
WARN: Process `SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS` publishDir path contains a variable with a null value
[65/65db54] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH (SRR9984183)
[d8/004938] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH (ERR1160846)
[22/0218e1] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH (DRR028935)
[e7/f652ab] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP (ERX1234253_ERR1160846)
[f8/673ef7] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP (SRX6725035_SRR9984183)
[fd/99a57d] Submitted process > SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP (DRX026011_DRR028935)
WARN: Process `SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP` publishDir path contains a variable with a null value
[21/8d4a4e] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP` publishDir path contains a variable with a null value
[05/22dc35] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP` publishDir path contains a variable with a null value
[29/098aa3] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
[98/f72dda] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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