Repositories list

• DRC-Portals

  Public
  TypeScript

  •0•0•30•6•Updated Feb 15, 2025Feb 15, 2025

• dokku

  Public
  Ma'ayanlab dokku server admin and user guide

  Shell

  •

  Other

  •0•2•0•1•Updated Feb 14, 2025Feb 14, 2025

• CFDECoauthorNetwork

  Public
  A fork to create the CFDECoauthorNetwork.

  JavaScript

  •

  Other

  •12•0•14•0•Updated Feb 14, 2025Feb 14, 2025

• blitzgsea

  Public
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.

  Jupyter Notebook

  •

  Apache License 2.0

  •9•41•1•0•Updated Feb 14, 2025Feb 14, 2025

• archs4dx

  Public
  JavaScript

  •

  Apache License 2.0

  •0•0•6•0•Updated Feb 12, 2025Feb 12, 2025

• datacrosswaysarchs4

  Public
  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Feb 12, 2025Feb 12, 2025

• Knowledge-Graph-UI

  Public
  Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries.

  neo4jneo4j-databaseknowledge-graph+ 9cytoscapenetworksuser-interfacegeneset-enrichmentcytoscapejscypher-query-languagenetworkscience+ 2

  JavaScript

  •

  Other

  •12•7•5•1•Updated Feb 11, 2025Feb 11, 2025

• GeneSetCart

  Public
  GeneSetCart is an interactive web-based platform that enables investigators to gather gene sets from various sources; augment these sets with gene-gene co-expression correlations and protein-protein interactions; perform set operations on these sets such as union, consensus, and intersection; and visualize and analyze these gene sets.

  genomicsbiomedical-informaticsproteomics+ 6transcriptomicsgeneset-enrichmentbiomedical-data-sciencegenesetsgeneset-enrichment-analysisproteomics-data-analysis

  TypeScript

  •

  GNU General Public License v3.0

  •0•0•4•0•Updated Feb 10, 2025Feb 10, 2025

• archs4py

  Public
  Python package to load and query ARCHS4 data

  Python

  •

  Apache License 2.0

  •3•15•2•0•Updated Feb 6, 2025Feb 6, 2025

• RummageneXRummaGEO

  Public
  Jupyter Notebook

  •0•0•2•0•Updated Jan 24, 2025Jan 24, 2025

• KnowledgeGraphUIDemo

  Public
  KnowledgeGraph Demo

  Jupyter Notebook

  •11•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• prismexp

  Public
  Advanced gene function prediction

  Python

  •

  Apache License 2.0

  •0•6•2•0•Updated Jan 22, 2025Jan 22, 2025

• Playbook-Workflow-Builder

  Public
  A repository for the Playbook Workflow Builder project.

  workflowdata-sciencebioinformatics+ 8gene-setsbiologysystems-biologygene-expressiongene-ontologyproteomicscwl+ 1

  TypeScript

  •

  Creative Commons Attribution 4.0 International

  •18•11•39•0•Updated Jan 16, 2025Jan 16, 2025

• GenesToWordCloud

  Public
  Remake of Genes2WordCloud

  JavaScript

  •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• ChEA-KG

  Public
  Demo of how to build a transcription factor KG using the KG UI

  Jupyter Notebook

  •11•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• HarmonizomePythonScripts

  Public
  Jupyter Notebook

  •10•23•0•1•Updated Jan 6, 2025Jan 6, 2025

• hypothesispage

  Public
  Simple hypothesis page, much simpler just to show PrismExp results

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• rummagene

  Public
  Python

  •

  Other

  •3•9•6•0•Updated Dec 18, 2024Dec 18, 2024

• EnrichrPythonScripts

  Public
  Python Jupyter notebooks for Enrichr species databases

  Jupyter Notebook

  •0•3•0•0•Updated Dec 11, 2024Dec 11, 2024

• rummageo

  Public
  Jupyter Notebook

  •

  Other

  •3•2•1•0•Updated Dec 11, 2024Dec 11, 2024

• Enrichr-Viz-Appyter

  Public
  Appyter for enrichr canvases, scatter plots, and Manhattan plots

  Jupyter Notebook

  •2•0•3•0•Updated Dec 3, 2024Dec 3, 2024

• speedrichr

  Public
  Java

  •2•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• postgrest-drs

  Public
  A PostgREST powered DRS server

  PLpgSQL

  •

  Other

  •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• datadistillery-kg

  Public
  Jupyter Notebook

  •0•0•3•0•Updated Nov 19, 2024Nov 19, 2024

• nbviewer

  Public
  nbconvert as a web service: Render Jupyter Notebooks as static web pages

  Python

  •

  Other

  •556•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• biojupies

  Public
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

  cloudbioinformaticsrna-seq+ 5jupyterpipelinenotebooksystems-biologydcppc

  HTML

  •

  Other

  •30•111•42•42•Updated Nov 12, 2024Nov 12, 2024

• lncRNAlyzr-issues

  Public
  A repo to report issues related the lncRNAlyzr app

  0•0•3•0•Updated Nov 10, 2024Nov 10, 2024

• TargetRanger

  Public
  JavaScript

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  Other

  •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• proxy

  Public
  A convenient and generic proxy image

  Shell

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• D2H2-site

  Public
  HTML

  •

  Other

  •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024