Skip to content

@MaayanLab Ma'ayan Lab

Change the repository type filter

All

    Repositories list

    385 repositories

    • appyter-catalog

      Public
      A catalog of appyter notebooks
      Jupyter Notebook
      •
      Other
      •47•37•27•6•Updated Aug 7, 2025Aug 7, 2025

    • xalign

      Public
      Hassle-free RNA-seq alignment
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • sc2DAT

      Public
      JavaScript
      •0•0•2•0•Updated Aug 6, 2025Aug 6, 2025

    • KEA-KG-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries.
      TypeScript
      •
      GNU General Public License v3.0
      •16•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • ChEA-KG-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries.
      TypeScript
      •
      GNU General Public License v3.0
      •16•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • appyter

      Public
      jinja2-enabled jupyter notebooks
      Python
      •
      Other
      •6•37•15•5•Updated Aug 5, 2025Aug 5, 2025

    • gsfm-predictions

      Public
      TypeScript
      •0•0•1•0•Updated Aug 5, 2025Aug 5, 2025

    • DRC-Portals

      Public
      TypeScript
      •0•0•32•8•Updated Aug 5, 2025Aug 5, 2025

    • cfde-c2m2

      Public
      A collection of utilities for simplifying the C2M2 submission process.
      Python
      •0•1•1•0•Updated Aug 1, 2025Aug 1, 2025

    • Enrichr-Viz-Appyter

      Public
      Appyter for enrichr canvases, scatter plots, and Manhattan plots
      Jupyter Notebook
      •2•0•3•0•Updated Aug 1, 2025Aug 1, 2025

    • k8s-docs

      Public
      Ma'ayanlab k8s server admin and user guide
      Python
      •
      Other
      •1•0•0•0•Updated Jul 30, 2025Jul 30, 2025

    • rummagene

      Public
      Python
      •
      Other
      •3•11•7•0•Updated Jul 30, 2025Jul 30, 2025

    • EnrichrPythonScripts

      Public
      Python Jupyter notebooks for Enrichr species databases
      Jupyter Notebook
      •0•3•0•0•Updated Jul 30, 2025Jul 30, 2025

    • archs4dx

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•5•0•Updated Jul 30, 2025Jul 30, 2025

    • server-templates

      Public
      Docker containers of preconfigured servers and web application stacks.
      TypeScript
      •3•3•0•0•Updated Jul 30, 2025Jul 30, 2025

    • Knowledge-Graph-UI

      Public
      Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries. Example implementation:
      neo4jneo4j-databaseknowledge-graphcytoscapenetworksuser-interfacegeneset-enrichmentcytoscapejscypher-query-languagenetworkscience
      TypeScript
      •
      Other
      •16•11•5•1•Updated Jul 28, 2025Jul 28, 2025

    • archs4py

      Public
      Python package to load and query ARCHS4 data
      Python
      •
      Apache License 2.0
      •3•23•3•0•Updated Jul 25, 2025Jul 25, 2025

    • KnowledgeGraphUIDemo

      Public
      KnowledgeGraph Demo
      Jupyter Notebook
      •13•1•0•0•Updated Jul 25, 2025Jul 25, 2025

    • PINetworkDemo

      Public
      KnowledgeGraph Demo
      Jupyter Notebook
      •13•0•0•0•Updated Jul 20, 2025Jul 20, 2025

    • drc-static

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Jul 16, 2025Jul 16, 2025

    • biojupies-plugins

      Public
      User-submitted RNA-seq data analysis tools for BioJupies.
      bioinformaticsjupytersystems-biology
      Python
      •
      Apache License 2.0
      •13•20•12•1•Updated Jul 16, 2025Jul 16, 2025

    • kubernetes-auto-ingress

      Public
      Auto-generate kubernetes ingresses based on a deployment annotation.
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Jul 14, 2025Jul 14, 2025

    • maayanlab-bioinformatics

      Public
      A collection of useful functions for bioinformatics data analysis
      Python
      •
      Apache License 2.0
      •2•24•0•0•Updated Jul 14, 2025Jul 14, 2025

    • cfde-wheel

      Public
      Documentation for CFDE Navigation Wheel
      TypeScript
      •
      Other
      •0•1•0•0•Updated Jul 14, 2025Jul 14, 2025

    • dokku

      Public
      Ma'ayanlab dokku server admin and user guide
      Shell
      •
      Other
      •1•2•0•0•Updated Jul 14, 2025Jul 14, 2025

    • ufs

      Public
      Python Universal File System (UFS)
      Python
      •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • helm-charts

      Public
      A repository for helm charts
      Smarty
      •0•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • KEA3web

      Public
      HTML
      •1•0•6•0•Updated Jun 25, 2025Jun 25, 2025

    • L2S2

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•1•0•Updated Jun 18, 2025Jun 18, 2025

    • ChEA-KG

      Public
      Demo of how to build a transcription factor KG using the KG UI
      Jupyter Notebook
      •13•1•0•0•Updated Jun 18, 2025Jun 18, 2025