Repositories list

• LikelihoodProfiler.jl

  Public
  LikelihoodProfiler is a Julia package for practical identifiability analysis and confidence intervals evaluation.

  juliasystems-biologyconfidence-intervals+ 3likelihoodidentifiabilityidentifiability-analysis

  Julia

  •

  MIT License

  •3•19•7•0•Updated Oct 30, 2024Oct 30, 2024

• heta-case-mini

  Public
  Demo example of QSP platfrom developed with Heta and qs3p-js

  ci-cdqspheta

  R

  •

  MIT License

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• alco

  Public
  A simple model of alcohol PK build on published data

  pharmacometricspharmacokineticsalcohol+ 3identifiabilityhetaqsp-modeling

  Julia

  •

  MIT License

  •1•0•0•0•Updated Sep 26, 2024Sep 26, 2024

• insulin-signaling-t2d

  Public
  Notebooks usage case: Insulin Signaling in Type 2 Diabetes

  jupyter-notebookrmarkdownmrgsolve+ 3hetapluto-notebooksqsp-modeling

  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• drug-loaded-nanoparticles

  Public
  PBPK Modeling For Therapeutic Nanoparticles Loaded With Drug

  computational-biologynanoparticlespbpk+ 2hetaqsp-modeling

  Julia

  •

  MIT License

  •0•1•0•0•Updated Sep 3, 2024Sep 3, 2024

• mathjs-mathml

  Public
  It extends mathjs library by function translating the mathjs' expressions to MathML string

  JavaScript

  •

  Apache License 2.0

  •0•1•0•2•Updated Feb 7, 2024Feb 7, 2024

• a50

  Public
  R

  •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• ant-mito-model

  Public
  Adenine Nucleotide Translocase model

  R

  •

  MIT License

  •1•0•0•0•Updated Dec 29, 2023Dec 29, 2023

• faah-inhibitor

  Public
  [reproduced] QSP modeling platform describing Fatty Acid Amide Hydrolase inhibition in human

  qsppharmacometricsmodeling-dynamic-systems+ 1heta

  R

  •

  MIT License

  •0•0•0•0•Updated Dec 28, 2023Dec 28, 2023

• SbmlViewer

  Public
  The collection of transformations from SBML files into human readable formats

  visualizationsystems-biologysbml+ 2transformationhuman-readable-formats

  XSLT

  •

  Apache License 2.0

  •2•6•1•5•Updated Dec 27, 2023Dec 27, 2023

• covid19-qsp-model

  Public
  Open Source QSP model describing SARS-CoV-2 virus and host cell life cycles, immune response and therapeutic treatments

  virussystems-pharmacologyqsp+ 3mathematical-modellinghetacovid-19

  MATLAB

  •

  MIT License

  •1•3•0•0•Updated Dec 27, 2023Dec 27, 2023

• 5db

  Public
  Documentation for fIVE DB

  HTML

  •0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

• slv-utils

  Public
  Utilities for working with SLV and DAT files.

  systems-biologysystems-pharmacologydbsolve

  JavaScript

  •

  Apache License 2.0

  •0•0•2•1•Updated Apr 20, 2023Apr 20, 2023

• units-parser

  Public
  Parsing and transformation of units of measurements

  systems-biologysystems-pharmacology

  JavaScript

  •

  MIT License

  •0•0•0•6•Updated Dec 30, 2022Dec 30, 2022

• mathjs-translate

  Public
  Utilites for manipulation of mathjs expressions.

  expressionsmathjs

  JavaScript

  •

  Apache License 2.0

  •0•1•0•6•Updated Dec 30, 2022Dec 30, 2022

• LikelihoodProfiler.py

  Public
  python3confidence-intervalslikelihood+ 3identifiabilityconfidence-estimationidentifiability-analysis

  Python

  •

  MIT License

  •0•3•0•12•Updated Dec 8, 2022Dec 8, 2022

• dbs-package

  Public
  Accessory R functions to support DBSolveOptimum

  systems-biologysystems-pharmacologydbsolve

  R

  •

  MIT License

  •0•0•0•0•Updated Aug 3, 2022Aug 3, 2022

• vp-erythropoiesis

  Public
  C++

  •0•0•0•0•Updated May 29, 2022May 29, 2022

• likelihoodprofiler-cases

  Public
  Storing test and experimental cases for LikelihoodProfiler.jl

  Jupyter Notebook

  •

  MIT License

  •3•3•0•0•Updated Jun 18, 2021Jun 18, 2021

• covid-19-data

  Public archive
  Provide a simple and unified interface to COVID-19 latest datasets

  data-sciencestatisticsmodeling+ 3data-transformationhealthcovid-19

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 1, 2021Jan 1, 2021

• mathsjs-cmathml

  Public archive
  Translation from mathjs object to content MathML

  translationmathjscontent-mathml

  JavaScript

  •

  Apache License 2.0

  •0•2•0•6•Updated Jan 1, 2021Jan 1, 2021

• topo-sort

  Public
  Simple and fast implementation of topological sorting. No dependencies. A circular graph will throw an error with circular nodes info.

  JavaScript

  •

  MIT License

  •1•0•0•0•Updated May 27, 2019May 27, 2019

• platform-template

  Public archive
  MIT License

  •0•0•0•0•Updated Dec 13, 2018Dec 13, 2018

• pretty-xml-textconv

  Public
  Transforming xml to pretty form in command prompt for git diff.

  xmlgit-diff

  JavaScript

  •

  Apache License 2.0

  •0•1•0•0•Updated Jun 11, 2018Jun 11, 2018

• sbio-to-json

  Public
  Code for transformation of Matlab/Simbiology model to JSON format

  jsonsystems-biologyformat-converter+ 1systems-pharmacology

  MATLAB

  •

  Apache License 2.0

  •0•1•0•0•Updated Apr 26, 2018Apr 26, 2018

• confest

  Public
  systems-biologyconfidence-intervalsidentifiability

  R

  •1•0•0•0•Updated Jan 24, 2017Jan 24, 2017