Update picard image to v3.4.0

[EddieLF]

Updates the out of date Picard image from v2.27.4 (released June 2022) to the latest release v3.4.0

Of particular interest is this bugfix:

• Fix failures to allocate arrays with a very large Java heap size by @EthanNelson-Moore in Fix failures to allocate arrays with a very large Java heap size broadinstitute/picard#1986

I don't fully comprehend the logic here, but in the PR body

... This was causing MarkDuplicates to fail with a Java heap size of slightly less than 1TB when MAX_RECORDS_IN_RAM was not specified (and therefore calculated based on the amount of available memory).

Reviewing this PR made me realise that MAX_RECORDS_IN_RAM does NOT have a hardcoded default of 500000 like the GATK docs would have you believe. If not specified, the max records value is derived from system information. Although this case is using 10x the RAM we usually use, it still may explain why our jobs have been failing.

• Also updates the base image to bookworm-slim and the Micromamba install to the latest

[github-actions]

🐳 Expected Tags

Some Dockerfiles have been modified in this PR. New tags are expected to be deployed.
The table below shows what the tags are expected to be on merging this PR.

Name	Tag
picard	3.4.0-1

[MattWellie]

🤞

totally unsure if the linked changelog note is relevant to us, but it sure feels like it!