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Update picard image to v3.4.0 #280

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Merged
EddieLF merged 1 commit into from
Feb 25, 2026
Merged

Update picard image to v3.4.0 #280

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9 changes: 5 additions & 4 deletions images/picard/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,14 +1,15 @@
FROM debian:buster-slim
FROM debian:bookworm-slim

ENV MAMBA_ROOT_PREFIX /root/micromamba
ENV PATH $MAMBA_ROOT_PREFIX/bin:$PATH
ARG VERSION=${VERSION:-2.27.4}
ARG VERSION=3.4.0

RUN apt-get update && apt-get install -y git wget bash bzip2 zip && \
rm -r /var/lib/apt/lists/* && \
rm -r /var/cache/apt/* && \
wget -qO- https://api.anaconda.org/download/conda-forge/micromamba/0.8.2/linux-64/micromamba-0.8.2-he9b6cbd_0.tar.bz2 | tar -xvj -C /usr/local bin/micromamba && \
mkdir ${MAMBA_ROOT_PREFIX} && \
wget -qO- https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj -C /usr/local/bin --strip-components=1 bin/micromamba && \
chmod +x /usr/local/bin/micromamba && \
mkdir -p ${MAMBA_ROOT_PREFIX} && \
micromamba install -y --prefix ${MAMBA_ROOT_PREFIX} -c bioconda -c conda-forge \
picard=${VERSION} samtools google-cloud-sdk && \
rm -r /root/micromamba/pkgs