Snakefile (rules and relationships)

This section shows the different rules and different relationships between them.

Single-End data

Paired-End data

Files and rules

Here we show the rules and relationships with additional information on where (which files) the rules can be found.

Single-end data:

Paired-end data:

Next section

7. Scripts

Wiki index

Basic steps to run & get an idea of the workflow:

1. Overview
2. Input files
3. Configuration file
4. Running Snakemake
5. Output structure

Advanced information to better understand & modify the workflow:

6. Snakefile (rules and relationships)
7. Scripts
8. Software and tools