Open Call #1: Murine Skeletal Muscle Analysis
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Mar 18, 2024
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cellpose
Here are 15 public repositories matching this topic...
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
cell-segmentation watershed-algorithm single-cell-rna-seq spatial-transcriptomics merfish cellpose vizgen vizgen-postprocessing
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Nov 22, 2023 - Python
Open Call #1: Segmentation and Tracking of Epithelial Cells
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Jul 24, 2024 - Jupyter Notebook
Python Instance (map) Eikonal Function Solver
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Aug 2, 2023 - Python
This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1. Demo application available at https://segmentorganoids.streamlit.app/
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Jul 5, 2024 - Jupyter Notebook
Example workflows for image processing, segmentation and analysis. Stitching and alignment functions also implemented.
opencv scikit-learn image-segmentation image-analysis cell-segmentation skimage image-processing-python napari microscopy-data cellpose
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Nov 15, 2023 - Jupyter Notebook
Single cell resolution 3D imaging and segmentation within intact live tissues
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Feb 3, 2025 - Jupyter Notebook
MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection
deep-learning image-processing image-segmentation fiji-plugin cell-segmentation nuclei-segmentation cellpose high-content-imaging foci-detection
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Nov 22, 2024 - Java
Large-scale cell segmentation with cellpose.
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Feb 10, 2025 - Python
Mammary cell shape computation over time with Trackmate-Cellpose
deep-learning imagej fiji image-analysis live-cell-imaging breast-cancer trackmate cell-shape cellpose intravital-imaging cellpose-trackmate cell-behaviour image-quantification calebadawson mammary-gland breast-development
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Jan 6, 2025 - Python
Graphical tool for creating image segmentation annotations and training custom Cellpose models
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May 6, 2024 - Python
Cell segmentation and tracking pipeline for time-lapse microscopy data using Cellpose. Includes segmentation, tracking, and correlation analysis of cell properties over time.
python deep-learning image-processing microscopy cell-segmentation cell-tracking time-lapse-imaging napari biological-imaging cellpose
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Feb 19, 2025 - Jupyter Notebook
Wrapper code for segmentation of cells and nuclei with Cellpose.
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Jul 19, 2023 - Python
Encoder-Decoder Cell and Nuclei segmentation models
ai ml pytorch microscopy cell-segmentation digital-pathology panoptic-segmentation nuclei-segmentation tissue-segmentation cellpose timm stardist hovernet omnipose
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Feb 18, 2025 - Python
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