Cell type pipes for R
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Jan 27, 2024 - R
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celltype-annotation
Here are 7 public repositories matching this topic...
single cell foundation model for Gene network inference and more
open-source embeddings rnaseq zero-shot-learning denoising single-cell-rna-seq cell-biology batch-correction gene-regulatory-network celltype-annotation large-language-models llms large-cell-models zero-imputation
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Jan 26, 2025 - Jupyter Notebook
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…
machine-learning scalability classification single-cell annotation-tool harmonization ngs-analysis single-cell-rna-seq cell-biology celltype-annotation
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Jul 18, 2022 - R
Supervised cell type identification for scATAC-seq data
bioinformatics single-cell cell-type-classification supervised-classification-methods cell-type-identification celltype-annotation
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Aug 23, 2023 - Python
Implementation of entropy of mixing algorithm in python
opensource bioinformatics rna-seq feature-selection rna-seq-analysis bioinformatics-analysis bioinformatics-algorithms bioinformatics-tool celltype-annotation
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Oct 19, 2022 - Jupyter Notebook
Custom groovy scripts for QuaPath
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Jan 22, 2024 - Groovy
Modification of the Original ScType Method for Barcode Annotation using KNN Algorithm
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Feb 10, 2024 - R
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