circular RNA analysis toolset

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

A Python3-base pipeline for translated circular RNA(circRNA) identification

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

A sensitive and fast tool for circular RNA detection from RNA-Seq data

CircRNA testing and ploting R package

R language based circRNA visualization toolbox

This repository contains the results and comparison visualization of circRNA candidates detected by circRNA prediction softwares.

A pipeline to map junction reads for circular intronic RNAs (ciRNAs)

Immune checkpoint blocakde-related circRNA signature (ICBcircSig) score model based on progression-free survival-related circRNAs to predict immunotherapy efficacy.

circRNA ReAlign Inner Splice and Expression detection

An assembler for circular RNAs

Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets

🐳 Docker image for CirComPara

Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism

Analysis and visualization R scripts of my research 「Genome-wide profiling of circular RNAs during the hybridization of two elite inbred lines of Gossypium hirsutum