Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

BioBombe: Sequentially compressed gene expression features enhances biological signatures

A repository for the Playbook Workflow Builder project.

Evolutionary Transcriptomics with R

MSigDB gene sets for multiple organisms in a tidy data format

📊 Identify cell types and pathways affected by genetic risk loci.

Lightweight Iterative Gene set Enrichment in R

An r interface to perform ROMA

R wrapper for ermineJ

resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.

Code and resources related to the olfactory regeneration project

An open-source webserver that allows for easy, reproducible genomics analyses between different webservers

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

gene-set clustering and network visualization

A python package that consists of functions that process publicly available annotated sets of genes

Experimental version of data package associated with chipenrich

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

A client for an open-source web app that allows creating, sharing, and analyzing gene sets

Gene sets and functions for working with them.

Package to analyse gene sets