Heritability in plant breeding - R and SAS code examples

Sample code for ldsc analyses in UKBB

Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)

Code and simulations using interaction-LD score regression

MultiVariate Polygenic Mixture Model

Topological Learning for Brain Networks (Annals of Applied Statistics; MICCAI 2021)

gwas workflow from raw intensity data to in-silico functional mapping

A library for calculating penetrance tables of any bivariate epistasis model.

Regional Heritability Analysis is a software package for estimating regional heritability of small genomic segments.

HESS pipeline

Pedigree Relatedness Summary Parameters R package

The project focused on the analysis of foxes from 3 different farms and the subsequent presentation of trait heritability results, genetic trends, breeding values and relationship matrix.

Highly Efficient Imaging Genetics (HEIG)

BioTools is a repository that has many scripts which can be utilized to solve biological problems.

Non-Additive LD Score Regression

Developmental version of R package BayesTwin

INSA Rennes 4EII cpp Labs

R package for wrangling and summarising 'animal' brms models