Heritability in plant breeding - R and SAS code examples

Sample code for ldsc analyses in UKBB

MultiVariate Polygenic Mixture Model

Topological Learning for Brain Networks (Annals of Applied Statistics; MICCAI 2021)

Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)

Developmental version of R package BayesTwin

A library for calculating penetrance tables of any bivariate epistasis model.

Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

The project focused on the analysis of foxes from 3 different farms and the subsequent presentation of trait heritability results, genetic trends, breeding values and relationship matrix.

Code and simulations using interaction-LD score regression

examples Python OOP

Non-Additive LD Score Regression

gwas workflow from raw intensity data to in-silico functional mapping

Regional Heritability Analysis is a software package for estimating regional heritability of small genomic segments.

INSA Rennes 4EII cpp Labs

R package for wrangling and summarising 'animal' brms models

Code to accompany the paper "How accurate can genetic predictions be?" by Dreyfuss, Levner, et al.

HESS pipeline

Pedigree Relatedness Summary Parameters R package