#
iqtree
Here are 5 public repositories matching this topic...
This repository provides a comprehensive tutorial for phylogenetic analysis, covering data collection, sequence alignment, tree construction, and interpretation. It runs on AWS SageMaker using Jupyter notebooks and includes tools like MAFFT, Nextclade, and IQ-TREE.
python bioinformatics gcp computational-biology phylogenetic-trees phylogenetics population-genetics high-throughput-sequencing genome-assembly r-programming radseq ipyrad ddrad-seq iqtree phylogenetic-inference
-
Updated
Jun 6, 2025 - Jupyter Notebook
A Nextflow pipeline to generate a phylogenetic tree from SKA alignment
workflow nextflow alignment ska phylogeny fastme phylogenetic-tree nextflow-pipeline reference-free fasttree iqtree raxml-ng split-kmer rapidnj
-
Updated
Dec 19, 2024 - Nextflow
Complete pipeline that mirrors the manuscript: reference based assembly with depth masking, de novo checks, phylogeny with configurable models including ModelFinder, and targeted mutation analysis for G and F versus NC_038235.1 and NC_001781.1. Includes CI and environment files for easy setup.
-
Updated
Sep 30, 2025 - Python
This repository contains some phylogenetic trees I have done for practical purposes.
bioinformatics evolution phylogenetics tracer molecular-biology phylogeny mrbayes evolutionary-biology iqtree raxml-ng partitionfinder2
-
Updated
Apr 22, 2025
Improve this page
Add a description, image, and links to the iqtree topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the iqtree topic, visit your repo's landing page and select "manage topics."