The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.

Some scripts to make your bioinformatics analyses reproducible and a bit easy 🤓

This pipeline automates the process of generating phylogenetic trees from sequence data, specifically designed for high-throughput and efficient analysis.

🦇🦠🌳Study on detection of Brno loanvirus in Southern Russia

A Python script that align SARS-CoV-2 genomes identifying and reporting pointwise variations.

Complete pipeline that mirrors the manuscript: reference based assembly with depth masking, de novo checks, phylogeny with configurable models including ModelFinder, and targeted mutation analysis for G and F versus NC_038235.1 and NC_001781.1. Includes CI and environment files for easy setup.

Microbiome analysis pipeline with reference tutorial. This code was written in October 2024 to process rRNA marker gene data (16S and ITS) from rhizosphere soil samples.

This repository provides a reproducible pipeline for phylogenetic analysis using Nextflow, BLASTP, CD-HIT, MAFFT, trimAl, and IQ-TREE. The workflow supports automated BLAST search, clustering, alignment, trimming, and tree inference for protein.

Pipeline to get a protein's residues conservation JSD scores

This repository contains a set of scripts and workflows designed to search for Respiratory Complex I (NADH Ubiquinone Oxidoreductase) subunits in prokaryotic genomes and proteomes.

This project performs an automated phylogenetic analysis of nucleotide sequences retrieved from NCBI. The pipeline includes sequence alignment, concatenation, phylogenetic inference (maximum likelihood, maximum parsimony, and Bayesian), and formatting for visualization.