Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
snp phase strain marker-gene-analysis metagenomics-toolkit profile-strains metaphlan3 metagenotyping genotype-frequency microbial-strain
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Updated
May 16, 2024 - Shell