metagenomics-toolkit
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🌊 Robust workflows for gathering data about your local ocean.
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Jul 19, 2023 - Jupyter Notebook
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
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May 16, 2024 - Shell
A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.
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Aug 17, 2024 - Jupyter Notebook
An interactive interface for exploration of highly complex metagenomes
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Nov 29, 2023 - Python
Atavistic processing of metagenomics data.
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May 26, 2023 - Python
metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
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May 19, 2023 - Python
StrainIQ is an n-gram based method to identify and quantify microbial communities in metagenomics samples.
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Feb 23, 2023 - Python
metegnome sequence extractions from MAGs
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Sep 29, 2024 - Go
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