Make Picrust2 Output Analysis and Visualization Easier

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2

Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output

Annotate PICRUSt2 functional IDs (KO, EC, Pfam, etc.) using description mapfiles

En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.

This repository contains scripts, outputs, and documentation related to my MPhil thesis project in Biodata Analytics and Computational Genomics, Kwame Nkrumah University of Science and Technology (KNUST), Ghana.

A machine learning-based study aimed at identifying predictive biomarkers and classifying Type 2 Diabetes (T2D) status using gut microbiome data.